| 摘要: |
| 目的:探讨2009年新型甲（A）型H1N1流感病毒血凝素（HA）基因与世界各地不同年代分离的A/H1N1代表株HA基因的进化关系。方法:从NCBI数据库下载2009年新型A/H1N1亚型流感病毒的HA基因序列以及以往流行的人、猪和禽的A/H1N1亚型流感病毒参考序列，采用Molecular Evolutionary Genetics Analysis version 4.0（MEGA4.0）软件进行序列比对和构建系统进化树，并分别比较2009年新型甲型H1N1流感病毒HA基因与北美地区、欧洲地区、亚洲地区A/H1N1流感病毒HA基因编码蛋白的氨基酸序列。结果:不同时期人A/H1N1亚型流感病毒代表株HA基因进化分析显示：2009年新型A/H1N1流感病毒HA基因与1976~2007年北美地区分离的7株人A/H1N1亚型流感病毒具有较高的同源性，与欧洲和亚洲地区的同源性较低。不同种属间A/H1N1亚型流感病毒HA基因进化分析显示：2009年新型A/H1N1流感病毒HA基因与1998和2007年北美地区分离的A/H1N1猪流感病毒的HA基因进化关系较近，与欧洲及亚洲地区分离的A/H1N1猪流感病毒及A/H1N1禽流感病毒进化关系较远。氨基酸比对结果显示2009年新型A/H1N1流感病毒HA基因的重要抗原位点与北美地区分离的A/H1N1猪流感病毒相近，与欧洲和亚洲地区分离的A/H1N1猪流感病毒及人类流感病毒疫苗株相比变化较大。结论:2009年新型甲型H1N1流感病毒HA基因可能是北美地区甲型H1N1猪流感病毒长期进化并与该地区人A/H1N1流感病毒部分基因片段重排的结果，对人H1N1甲型流感病毒疫苗可能并不敏感。 |
| 关键词: H1N1甲型流感病毒 血凝素基因 进化 基因重排 |
| DOI：10.3724/SP.J.1008.2009.0613 |
| 投稿时间：2009-05-22修订日期：2009-06-07 |
| 基金项目:军队“十一五”科技攻关计划（06G65）,上海市自然科学基金（07ZR14141）,上海市公共卫生“三年行动计划”重点学科项目（08GWZX0201,08GWZX0101）. |
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| Evolution analysis of hemagglutinin gene of novel influenza virus A/H1N1 in 2009 pandemic |
| XIE Jia-xin△, YIN Jian-hua△, LI Shu-hua, LU Wen-ying, HAN Yi-fang, HAN Lei, ZHANG Hong-wei, CAO Guang-wen* |
| (Department of Epidemiology, College of Basic Medical Sciences, Second Military Medical University, Shanghai 200433, China) |
| Abstract: |
| Objective:To investigate the evolutionary relationship of the hemagglutinin（HA）gene of novel influenza virus A/H1N1 in 2009 pandemic with the HA genes of A/H1N1 viruses isolated in different parts of the world previously. Methods: The sequences of the HA gene of the novel A/H1N1 strain and the reference sequences of human, swine, and avian influenza A viruses were retrieved from NCBI. MEGA 4.0 software was employed to align, blunt nucleotide sequences, and construct phylogenetic tree. The deduced amino acid sequences of the HA genes of novel influenza virus A/H1N1 were compared with those of the A/H1N1 isolates in North America, Europe, and Asia.Results: Phylogenetic tree of the HA genes of A/H1N1 strains worldwide showed that the HA genes of novel influenza virus A/H1N1 in 2009 shared a high homology with those of the 7 human A/H1N1 influenza viruses isolated in North America during 1976 to 2007, and shared a low homology with those of the human influenza viruses A/H1N1 isolated in Europe and Asia. Phylogenetic tree of the HA gene between different species showed that the HA genes of novel influenza virus A/H1N1 in 2009 had a close evolutionary relationship with those of the two swine A/H1N1 strains isolated in 1998 and 2007 in North America,but a distant evolutionary relationship with those of swine and avian A/H1N1 isolated in Europe and Asia. Alignment of amino acid at important antigenic sites showed that the HA gene of the novel A/H1N1 strains shared important antigen sites with the swine A/H1N1 influenza viruses isolated in North America, and did not share with the swine A/H1N1 influenza viruses isolated in Europe and Asia or the human A/H1N1 influenza vaccine strains.Conclusion: The HA genes of the novel influenza virus A/H1N1 might originate from swine A/H1N1 influenza viruses in North America after a long time evolution and the reassortment with fragments of human A/H1N1 in the area, and the current A/human/H1N1 influenza vaccine may not be effective for the novel A/H1N1 virus. |
| Key words: H1N1 subtype influenza A virus hemagglutinin gene evolution gene rearrangement |
